Introduction
Here are a few CLI commands to convert a java key store file to a PKCS12 encoded cert chain and back. This requires the java development kit (Sun/Oracle JDK) 6 or newer.
Instructions
JKS → P12
$> keytool -importkeystore \ -srckeystore keystore.jks \ -srcstoretype JKS \ -deststoretype PKCS12 \ -destkeystore keystore.p12
P12 → JKS
$> keytool -importkeystore \ -srckeystore keystore.p12 \ -srcstoretype PKCS12 \ -deststoretype JKS \ -destkeystore keystore.jks
References
http://blog.ejbca.org/2008/02/converting-keystores-between-jks-and.html